Output from the Identify HRD Score workflows
All of the original outputs from the underlying workflows have been retained, to see those, go to the Identify QIAseq DNA Variants template workflows (The Identify QIAseq DNA Variants template workflows).
There are two outputs that are specific to the Identify HRD Score workflows.
- The HRD report contains the HRD score as well individual LOH, LST and TAI scores and lists of regions/events called for each type of chromosomal abberation. See the Calculate LOH and HRD (beta) tool for a detailed description Calculate LOH and HRD (beta).
- A variant track called Variants_15_HRR_genes or Somatic_variants_15_HRR_genes lists identified variants in target regions of the 15 HRR genes ATM, BARD1, BRCA1, BRCA2, BRIP1, CDK12, CHEK1, CHEK2, FANCA, FANCL, PALB2, RAD51B, RAD51C, RAD51D, RAD54L. The variants are also comprised in the full list of filtered variants, the additional output has only been included to facilitate easy inspection of variants in HRR genes.