Manuals
Browse the manual
Introduction to the Phylogeny Module
Phylogeny
Features
System requirements and installation of the Phylogeny Module
System requirements
How to install a plug-in
How to uninstall a plug-in
Alignment of sequences
Create an alignment
Gap costs
Fast or accurate alignment algorithm
Aligning alignments
Fixpoints
Join alignments
How alignments are joined
Pairwise comparison
Pairwise comparison on alignment selection
Pairwise comparison parameters
The pairwise comparison table
Create Trees
K-mer Based Tree Construction
Create tree
Model Testing
Maximum Likelihood Phylogeny
Bioinformatics explained
Substitution models and distance estimation
K-mer based distance estimation
Distance based reconstruction methods
Maximum likelihood reconstruction methods
Bootstrap tests
Tree Settings
Minimap
Tree layout
Node settings
Label settings
Background settings
Branch layout
Bootstrap settings
Metadata
Node right click menu
Metadata and Phylogenetic Trees
Table Settings and Filtering
Add or modify metadata
Selection of specific nodes
Bibliography
Background settings
Background settings
Show label background
Show a background color for each label. Once ticked, it is possible to specify whether to use a fixed color or to use the color that is associated with the selected metadata category.
