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Browse the manual

• Introduction
  • Installation
• Basic usage
  • Handling passwords
  • Managing SSL certificates
  • Data objects, data files and the CLC URL
    • The CLC URL - name forms
    • The CLC URL - the ID form
    • Indicating local system files or folders
  • Result files and connecting analyses in pipelines
  • Executing workflows
  • Emptying the recycling bin for a CLC Server File Location

Executing workflows

Workflows installed on the CLCServer can be launched using the CLC Server Command Line Tools.

As with tools, the available options for a workflow are listed when you run the clcserver command with the required information for logging in, and include -A flag followed by the workflow name. Only unlocked workflow parameters, i.e. those that can be configured, will be listed.

The name of the workflow element the parameter is associated with is pre-pended to its name, to avoid conflicts involving identical parameter names.

If you edit parameter names in the workflow, please assign unique names to the parameters within a given workflow element.

Workflows are described in detail here: http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Workflows.html.

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