Map Long Reads to Reference report
Figure 5.1: Map Long Reads to Reference summary report
The report will summarize the results of the mapping process. An example of the first part of the report is shown in figure 5.4.
The information included in the report is:
- Summary statistics. A summary of the mapping statistics:
- References. The count of reference sequences, the average length, and the total number of bases.
- Mapped reads. The count of mapped reads, the percentage of mapped reads relative to total reads, the average read length, the total number of bases, and the percentage of bases relative to the total read count.
- Not mapped reads. The count of un-mapped reads, the percentage of un-mapped reads relative to total reads, the average read length, the total number of bases, and the percentage of bases relative to the total read count.
- Total reads. The total count of reads, the average read length, and the total number of bases.
- Distribution of read length. A visual representation of the occurrence of each specific read length, offering insights into the overall pattern and variability in the dataset.
- Distribution of mapped reads lengths. Equivalent to the above, but including mapped reads only.
- Distribution of un-mapped reads lengths. Equivalent to the above, but including un-mapped reads only.