• Product manuals

Browse the manual

• Introduction
  • The concept of CLC Haplotype Calling
  • Contact information
  • System requirements and installation
    • System requirements
    • Installation of plugins
    • Uninstalling plugins
  • Reference data management
    • The Reference Data Manager
• Data import
  • Import
    • VCF
    • Standard CLC Variant Track
• Data export
  • Export Genotype Track as VCF
  • Export Allele Table as CSV
  • Export Marker Genotypes as CSV or TSV
• Genotype Track
  • Genome Model
  • Locus Table
  • Allele Table
  • Header View
  • Track View
• Microhaplotype Caller
  • Microhaplotype Caller - Method
  • Microhaplotype Caller - Options
  • Microhaplotype Caller - Filters
    • General filters
    • Detection filters
    • Noise filters
  • Microhaplotype Caller - Annotations
• Glossary
  • Glossary
• Human Identity workflows
  • Detect QIAseq Human Indentity SNPs and Microhaplotypes
• Bibliography

Introduction

Welcome to CLC Haplotype Calling 22.0 beta 1 - a software package providing a haplotype-aware and VCF-friendly framework that enables you to perform detailed genome analysis and easily share genome information with external applications.

This first version of CLC Haplotype Calling is intended solely for analysis of QIAseq Human Identity (HID) targeted panel data. Analysis of other types of data is not yet supported.

Note that the functionality of this plugin is in beta. It is under active development and subject to change without notice. Generated results may not be accessible when later versions of the plugin are installed.

---

Subsections

• The concept of CLC Haplotype Calling
• Contact information
• System requirements and installation
• Reference data management

---