Executing workflows

Workflows installed on the CLCServer can be launched using the CLC Server Command Line Tools.

As with tools, the available options for a workflow are listed when you run the clcserver command with the required information for logging in, and include -A flag followed by the workflow name. Only unlocked workflow parameters, i.e. those that can be configured, will be listed.

The name of the workflow element the parameter is associated with is pre-pended to its name, to avoid conflicts involving identical parameter names.

If you edit parameter names in the workflow, we highly recommend unique names be given to the parameters within a given workflow element. If you do give the same name to multiple parameters in a given workflow element, each of the corresponding options available for use with the CLC Server Command Line Tools will have a number added, to ensure uniqueness.

Workflows are described in detail here: http://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Workflows.html.