Loss-of-heterozygosity track

If you have LOH detection enabled the Loss-of-heterozygosity track will contain detailed state predictions for both targets and variants by the hidden Markov model.
The type of observation, i.e. coverage or variant.
The most probable state, the following columns will contain the probabilities for each state.
The columns starting with ``emission'' contain the probability of the observation given the state. Since the model imposes a penalty on state changes this is not equal to the state probability, since this is influenced by nearby observations as well.