add_att_b_sites |
Add attB Sites |
alignment |
Create Alignment |
amino_acid_changes |
Amino Acid Changes |
annotate_conservation_score |
Annotate with Conservation Score |
annotate_exon_numbers |
Annotate with Exon Numbers |
annotate_from_known_variants |
Annotate from Known Variants |
annotate_overlapping |
Annotate with Overlap Information |
annotate_variant_flank |
Annotate with Flanking Sequences |
assemble_sanger_sequences |
Assemble Sequences |
blast |
BLAST |
blast_make_db |
Create BLAST Database |
blast_ncbi |
BLAST at NCBI |
bp_reaction |
BP Reaction |
chip_seq |
ChIP-Seq Analysis |
compare_sample_variant_tracks |
Compare Sample Variant Tracks |
compare_variants_within_group |
Compare Variants within Group |
consensus_sequence_extraction |
Extract Consensus Sequence |
contig_read_mapping |
Map Reads to Contigs |
convert_from_tracks |
Convert from Tracks |
convert_to_dna |
Convert RNA to DNA |
convert_to_rna |
Convert DNA To RNA |
convert_to_tracks |
Convert to Tracks |
coverage_analysis |
Coverage Analysis |
create_histogram |
Create Histogram |
create_track_list |
Create Track List |
denovo_assembly |
De Novo Assembly |
detailed_mapping_report |
Create Detailed Mapping Report |
download_genome |
Download Genome |
empirical_analysis_dge |
Empirical Analysis of DGE |
extract_annotations |
Extract Annotations |
extract_overlapping_reads |
Extract Reads Based on Overlap |
extract_sequences |
Extract Sequences |
filter_against_control_reads |
Filter against Control Reads |
filter_against_known_variants |
Filter against Known Variants |
filter_annotation_names |
Filter Annotations on Name |
filter_marginal_variants |
Filter Marginal Variant Calls |
filter_overlapping |
Filter Based on Overlap |
filter_reference_variants |
Filter Reference Variants |
find_open_reading_frames |
Find Open Reading Frames |
find_primer_binding_sites |
Find Binding Sites and Create Fragments |
fisher_exact_test |
Fisher Exact Test |
gaussian_statistical_analysis |
Gaussian Statistical Analysis |
gc_contents_graph_track |
Create GC Content Graph Track |
go_enrichment_variants |
GO Enrichment Analysis |
graph_threshold |
Identify Graph Threshold Areas |
import_tracks |
Import Tracks from File |
kmer_tree_construction |
K-mer Based Tree Construction |
local_realignment |
Local Realignment |
lr_reaction |
LR Reaction |
mapping_graph_tracks |
Create Mapping Graph Tracks |
merge_annotation_tracks |
Merge Annotation Tracks |
merge_mappings |
Merge Read Mappings |
merge_overlapping_pairs |
Merge Overlapping Pairs |
ml_phylogeny |
Maximum Likelihood Phylogeny |
model_testing |
Model Testing |
motif_search |
Motif Search |
ngs_import_fasta |
Fasta High-Throughput Sequencing Import |
ngs_import_illumina |
Illumina High-Throughput Sequencing Import |
ngs_import_iontorrent |
Ion Torrent High-Throughput Sequencing Import |
ngs_import_roche454 |
Roche 454 High-Throughput Sequencing Import |
ngs_import_sam |
Import SAM/BAM Files |
ngs_import_sanger |
Sanger High-Throughput Sequencing Import |
ngs_import_solid |
Solid High-Throughput Sequencing Import |
predict_splice_site |
Predict Splice Site Effect |
probabilistic_variant_detection |
Probabilistic Variant Detection |
process_tagged_sequences |
Demultiplex Reads |
proportion_statistical_analysis |
Count-based statistical analysis |
quality-based_variant_detection |
Quality-based Variant Detection |
read_mapping |
Map Reads to Reference |
reference_assemble_sanger_sequences |
Assemble Sequences to Reference |
reverse_complement_sequence |
Reverse Complement Sequence |
reverse_sequence |
Reverse Sequence |
rna_seq |
RNA-Seq Analysis |
secondary_peak_calling |
Secondary Peak Calling |
sequencing_qc_report |
Create Sequencing QC Report |
small_rna_annotate |
Annotate and Merge Counts |
small_rna_sampling |
Extract and Count |
statistics_target_regions |
Create Statistics for Target Regions |
structural_variant_detection |
InDels and Structural Variants |
translate_to_protein |
Translate to Protein |
tree_construction |
Create Tree |
trim |
Trim Sequences |
trio_analysis |
TRIO analysis |
workflow_output |
Workflow Output |