motif_search

--accuracy
<[FIFTY, SIXTY, SEVENTY,EIGHTY, NINETY, HUNDRED]> Required fraction of identity between sequence and specified motif (default: EIGHTY)
--add-annotations <Boolean> Add motif annotations to the input sequences (default: true)
--create-table <Boolean> Create and output a list of hits (default: true)
-d, --destination <ClcServerObjectUrl> Destination file or folder on server. If not specified the folder of the first input object will be used.
--exclude-n-matches <Boolean> Don't display search hit(s) for regions containing consecutive N's (default: false)
-i, --input <ClcObjectUrl> Input data on server
--include-negative-strand <Boolean> Include searching on the negative strand (default: false)
--log <Boolean> Enable creation of algo log file. (default: true)
--motif-list <ClcObjectUrl> Click the browse icon to the right to select from the Navigation Area
--motif-search-type
<[SIMPLE, JAVA,PROSITE, MOTIF_LIST]> motifSearchTypeKey (default: SIMPLE)
--search-string <String> The pattern to search for