ngs_import_illumina

-d, --destination <ClcServerObjectUrl> Destination file or folder on server.
--discard-failed-reads <Boolean> Remove failed reads (default: true)
--discard-quality-scores <Boolean> Discard quality scores (default: false)
--discard-seq-names <Boolean> Discard sequence names (default: true)
-f <ClcUrl> Files to import
--illumina-trim <Boolean> Illumina trim (default: false)
--log <Boolean> Enable creation of algo log file. (default: true)
--max-distance
Integer: >= 0 maximum distance (default: 250)
--min-distance
Integer: >= 0 minimum distance (default: 180)
--miseq-demultiplexing <Boolean> MiSeq de-multiplexing (default: false)
--paired-reads <Boolean> Paired reads (default: false)
--quality-score
<[SANGER, ILLUMINA_OLDILLUMINA_PHRED, ILLUMINA_TRIM]> , Quality score (default: SANGER)
--read-orientation
<[FORWARD_FORWARD,FORWARD_REVERSE, REVERSE_REVERSE,
REVERSE_FORWARD, UNKNOWN]> Read orientation (default: FORWARD_REVERSE)