structural_variant_detection

--breakpoints <Boolean> Create breakpoints (default: false)
-d, --destination <ClcServerObjectUrl> Destination file or folder on server. If not specified the folder of the first input object will be used.
--filter <Boolean> Filter variants (default: false)
-i, --input <ClcObjectUrl> Input data on server
--indel <Boolean> Create InDel variations (default: true)
--log <Boolean> Enable creation of algo log file. (default: true)
--max-mismatch
Integer: >= 0 When examining positions for excess of unaligned ends, only reads mapped with this or fewer mismatches will be considered. (default: 3)
--min-reads
Integer: >= 2 Mininum number of reads supporting this variant, before the variant will be reported. (default: 2)
--pvalue
Double: 0.0 < x <= 1.0 Threshold for calling significance in the Binomial distribution of unaligned end reads. (default: 1.0E-4)
--report <Boolean> Create Report (default: true)
--variants <Boolean> Create interchromosomal variations (default: true)