-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
-f, |
|
--format <Importerace ACE files (.ace) |
|
automaticimport Automatic |
|
blast_db BLAST Db (.phr/.pal - Protein, .nhr/.nal - Nucleotide) |
|
bsml DS Gene (bsml) |
Name of importer |
cas |
|
chp Expression array data: Affymetrix .CHP file (.chp) |
CLC Assembly (.cas) |
cif |
|
clc CLC (.clc) |
Macromolecular Crystallographic Info File (.cif) |
clustalw |
|
cm5 Clone Manager files (.cm5) |
Clustal Alignment (.aln) |
com.clcbio.baseimplementation.impo |
|
rtplugins.TrimLinkerLibraryImportP |
Trim adapter list (.xls/.xlsx/.csv) |
|
|
com.clcbio.genomics.base.algo.rnas MiRBase (.dat) |
|
|
|
embl Embl (.emb/.embl) |
|
excel |
|
expression_annotation Generic annotation file for expression data (.csv / .txt) |
Excel (.xls/.xlsx) |
expression_data_table |
|
expressionarray Expression array data: Affymetrix metrics or pivot file (.txt/.text, .csv) |
Generic expression data table format (.txt/.text, .csv) |
externalfile |
|
fasta FASTA (.fa/.fsa/.fasta) |
External File |
fasta_alignment |
|
gcg GCG sequence (protein/nucleotide) (.gcg) |
FASTA Alignment (.fa/.fsa/.fasta) |
gck |
|
genbank GenBank (.gbk/.gb/.gp) |
Gene Construction Kit File (.gcc) |
gene_ontology |
|
illumina_annotation Illumina annotation file (.csv/.txt/.text) |
Gene Ontology Annotation file |
illumina_expression |
|
lasergene Lasergene sequence (protein/nucleotide) (.pro/.seq) |
Illumina expression file (.txt/.text) |
msf |
|
netaffx Expression array data: Affymetrix NetAffx annotation file (.txt/.text, .csv) |
GCG Alignment (.msf) |
newick |
|
nexus Nexus data (.nxs/.nexus) |
Newick (.nwk/.newick) |
pdb |
|
phylib Phylip Alignment (.phy) |
Protein Data Bank (.pdb/.ent) |
pir |
|
raw_sequence Raw sequence data |
PIR (.pir) |
rna_structure |
|
sam_bam SAM/BAM files |
RNA Structure (.ct, .col, .rnaml/.xml) |
sequence_csv |
|
soft_geo_sample Expression array data: GEO SOFT format sample file (.txt/.text) |
Sequences in CSV format (.csv) |
soft_geo_series |
|
staden Staden sequence (.sdn) |
Expression array data: GEO SOFT format series file (.txt/.text) |
strider |
|
swissprot SwissProt (.swp) |
DNA Strider files (.str/.strider) |
table_csv |
|
text Plain Text (.txt/.text) |
Table in CSV format (.csv) |
trace |
|
zip Archive file (.zip, .gz, .tar) |
Trace files (.abi/.ab1/.scf/.phd) |
|
|
-s, --source <ClcFileUrl> |
Location of client or server file to be imported. If referring to client file, the file will be copied to the server. If referring to a file within the server file system, it must be within the server data import locations. |