alignment |
Create Alignment |
amino_acid_changes |
Amino Acid Changes |
annotate_conservation_score |
Annotate with Conservation Score |
annotate_exon_numbers |
Exon number annotation |
annotate_from_known_variants |
Annotate from Known Variants |
annotate_overlapping |
Annotate from Overlapping Annotations |
annotate_variant_flank |
Annotate with Flanking Sequences |
blast |
BLAST |
blast_make_db |
Create BLAST Database |
blast_ncbi |
BLAST at NCBI |
chip_seq |
ChIP-Seq Analysis |
compare_variants_within_group |
Compare Variants within Group |
consensus_sequence_extraction |
Extract Consensus Sequence |
convert_from_tracks |
Convert From Tracks |
convert_to_dna |
Convert RNA to DNA |
convert_to_rna |
Convert DNA To RNA |
convert_to_tracks |
Convert To Tracks |
denovo_assembly |
De Novo Assembly |
detailed_mapping_report |
Create Mapping Report |
download_genome |
Download Genome |
extract_sequences |
Extract Sequences |
filter_against_control_reads |
Filter against Control Reads |
filter_against_known_variants |
Filter against Known Variants |
filter_annotation_names |
Filter Annotations on Name |
filter_marginal_variants |
Filter Marginal Variant Calls |
filter_overlapping |
Filter against Overlapping Annotations |
filter_reference_variants |
Filter Reference Variants |
find_open_reading_frames |
Find Open Reading Frames |
find_primer_binding_sites |
Find Binding Sites and Create Fragments |
fisher_exact_test |
Fisher Exact Test |
gc_contents_graph_track |
Create GC Contents Graph Track |
go_enrichment_variants |
GO Enrichment Analysis |
import_tracks |
Import Tracks from File |
mapping_graph_tracks |
Create Mapping Graph Tracks |
merge_annotation_tracks |
Merge Annotation Tracks |
merge_mappings |
Merge Read Mappings |
merge_overlapping_pairs |
Merge Overlapping Pairs |
ngs_import_fasta |
Fasta High-Throughput Sequencing Import |
ngs_import_illumina |
Illumina High-Throughput Sequencing Import |
ngs_import_iontorrent |
Ion Torrent High-Throughput Sequencing Import |
ngs_import_roche454 |
Roche 454 High-Throughput Sequencing Import |
ngs_import_sam |
Import SAM/BAM Files |
ngs_import_sanger |
Sanger High-Throughput Sequencing Import |
ngs_import_solid |
Solid High-Throughput Sequencing Import |
predict_splice_site |
Predict Splice Site Effect |
probabilistic_variant_detection |
Probabilistic Variant Detection |
process_tagged_sequences |
Process Tagged Sequences |
quality-based_variant_detection |
Quality-based Variant Detection |
read_mapping |
Read Mapping |
rna_seq |
RNA-Seq |
secondary_peak_calling |
Secondary Peak Calling |
sequencing_qc_report |
Create Sequencing QC Report |
small_rna_annotate |
Annotate and Merge Counts |
small_rna_sampling |
Extract and Count |
statistics_target_regions |
Create Statistics for Target Regions |
translate_to_protein |
Translate to Protein |
trim |
Trim Sequences |
trio_analysis |
TRIO analysis |