-d, --destination <ClcServerObjectUrl> |
Destination file or folder on server. If not specified the folder of the first input object will be used. |
-f, |
|
--format <Importerace ACE files (.ace) |
|
automaticimport Automatic |
|
blast_db BLAST Db (.phr/.pal - Protein, .nhr/.nal - Nucleotide) |
|
bsml DS Gene (bsml) |
Name of importer |
cas |
|
chp Expression array data: Affymetrix .CHP file (.chp) |
CLC Assembly (.cas) |
cif |
|
clc CLC (.clc) |
Macromolecular Crystallographic Info File (.cif) |
clustalw |
|
cm5 Clone Manager files (.cm5) |
Clustal Alignment (.aln) |
com.clcbio.genomics.base.algo.rnas |
|
eq.smallrna.MirBaseImporter |
MiRBase (.dat) |
embl |
|
excel Excel (.xls/.xlsx) |
Embl (.emb/.embl) |
expression_annotation |
|
expression_data_table Generic expression data table format (.txt/.text, .csv) |
Generic annotation file for expression data (.csv / .txt) |
expressionarray |
|
externalfile External File |
Expression array data: Affymetrix metrics or pivot file (.txt/.text, .csv) |
fasta |
|
fasta_alignment FASTA Alignment (.fa/.fsa/.fasta) |
FASTA (.fa/.fsa/.fasta) |
gcg |
|
gck Gene Construction Kit File (.gcc) |
GCG sequence (protein/nucleotide) (.gcg) |
genbank |
|
gene_ontology Gene Ontology Annotation file |
GenBank (.gbk/.gb/.gp) |
illumina_annotation |
|
illumina_expression Illumina expression file (.txt/.text) |
Illumina annotation file (.csv/.txt/.text) |
lasergene |
|
msf GCG Alignment (.msf) |
Lasergene sequence (protein/nucleotide) (.pro/.seq) |
netaffx |
|
newick Newick (.nwk/.newick) |
Expression array data: Affymetrix NetAffx annotation file (.txt/.text, .csv) |
nexus |
|
pdb Protein Data Bank (.pdb/.ent) |
Nexus data (.nxs/.nexus) |
phylib |
|
pir PIR (.pir) |
Phylip Alignment (.phy) |
raw_sequence |
|
rna_structure RNA Structure (.ct, .col, .rnaml/.xml) |
Raw sequence data |
sam_bam |
|
sequence_csv Sequences in CSV format (.csv) |
SAM/BAM files |
soft_geo_sample |
|
soft_geo_series Expression array data: GEO SOFT format series file (.txt/.text) |
Expression array data: GEO SOFT format sample file (.txt/.text) |
staden |
|
strider DNA Strider files (.str/.strider) |
Staden sequence (.sdn) |
swissprot |
|
table_csv Table in CSV format (.csv) |
SwissProt (.swp) |
text |
|
trace Trace files (.abi/.ab1/.scf/.phd) |
Plain Text (.txt/.text) |
zip |
|
> |
Archive file (.zip, .gz, .tar) |
-s, --source <ClcFileUrl> |
Location of client or server file to be imported. If referring to client file, the file will be copied to the server. If referring to a file within the server file system, it must be within the server data import locations. |