ngs_import_iontorrent

-d, --destination <ClcUrl> Destination file or folder on server. If not specified the folder of the first input object will be used.
--discard-quality-scores <Boolean> Discard quality scores (default: false)
--discard-seq-names <Boolean> Discard sequence names (default: true)
-f <ClcUrl> Files to import
--linker-sequence <String> Ion Torrent Linker sequence (default: )
--log <Boolean> Enable creation of algo log file. (default: true)
--max-distance
Integer: >= 0 maximum distance (default: 500)
--min-distance
Integer: >= 0 minimum distance (default: 100)
--paired-reads <Boolean> Paired reads (default: false)
--read-orientation
<[FORWARD_FORWARD,FORWARD_REVERSE, REVERSE_REVERSE,
REVERSE_FORWARD, UNKNOWN]> Read orientation (default: FORWARD_REVERSE)
--use-clipping-information <Boolean> Use clipping information (default: true)