download_genome

--config <String> The configuration file containing the data location to download from
-d, --destination <ClcUrl> Destination file or folder on server. If not specified the folder of the first input object will be used.
--download-1000-genomes-variants
<Boolean> whether 1000 Genomes variants shall be downloaded (if specified in the configuration file (default: false)
--download-gene-annotations <Boolean> whether gene annotations shall be downloaded (if specified in the configuration file (default: false)
--download-hapmap-variants <Boolean> whether HapMap variants shall be downloaded (if specified in the configuration file (default: false)
--download-variants <String> comma-separated list of variants to download (as specified in the corresponding configuration file, e.g. 'COSMIC,dbsnp variations') (default: )
--log <Boolean> Enable creation of algo log file. (default: true)
--reference <[DOWNLOAD, TRACK]> Select where to get the reference from (default: DOWNLOAD)
--reference-track <ClcUrl> Select reference track for defining the genome