filter_marginal_variants

--apply-avg-quality-threshold <Boolean> Average base quality (default: true)
--apply-freq-threshold <Boolean> Variant frequency (default: true)
--apply-fwd-rev-balance-threshold
<Boolean> Forward/reverse balance (default: true)
--avg-quality-threshold
Double: >= 0.0 Remove variants that have a average base quality below this threshold. Note that this only applies to non-reference alleles.
-d, --destination <ClcUrl> Destination file or folder on server. If not specified the folder of the first input object will be used.
--freq-threshold
Double: 0.0 <= x <= 100.0 Remove variants that have a frequency below this threshold. Note that this only applies to non-reference alleles.
--fwd-rev-balance-threshold
Double: 0.0 <= x <= 0.5 Remove variants that have a forward/reverse balance below this threshold. Note that this only applies to non-reference alleles. Note that an equal distribution of forward and reverse reads would result in a balance of 0,5, and a completely skewed distribution would result in a balance of 0.
-i, --input <ClcUrl> Input data on server
--log <Boolean> Enable creation of algo log file. (default: true)
--track <ClcUrl> Select reference sequence track