Download MLST Schemes

For the most common bacteria, a MLST scheme has already been defined and can be downloaded from the databases at

To download the available MLST schemes, go to:

        Databases (Image databases_folder_closed_16_n_p) | NGS-MLST | Download MLST Schemes (PubMLST) (Image download_mlst_scheme_16_h_p)

This will bring up a dialog as shown in figure 16.1.

Image downloadmlstschemedialogstep1
Figure 16.1: Selecting all MLST schemes for download.

The list of is dynamically updated with the available MLST schemes. This means that it takes a short while before the dialog is shown (depending on your internet connection). You can select one or more schemes for download. Use the filter field to type the name of the schemes you are interested in.

We recommend to Save the schemes in the folder where you also saved the different databases you need to download for the CLC Microbial Genomics Module.

See Viewingschemes for information about the content of the downloaded scheme(s).